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Genome-wide identification of BXL genes in Populus trichocarpa and their expression under different nitrogen treatments.

Identifieur interne : 000369 ( Main/Exploration ); précédent : 000368; suivant : 000370

Genome-wide identification of BXL genes in Populus trichocarpa and their expression under different nitrogen treatments.

Auteurs : Jinyuan Chen [République populaire de Chine] ; Chunpu Qu [République populaire de Chine] ; Ruhui Chang [République populaire de Chine] ; Juanfang Suo [République populaire de Chine] ; Jiajie Yu [République populaire de Chine] ; Xue Sun [République populaire de Chine] ; Guanjun Liu [République populaire de Chine] ; Zhiru Xu [République populaire de Chine]

Source :

RBID : pubmed:32015953

Abstract

β-d-xylosidase (BXL) hydrolyzes xylobiose and xylo-oligosaccharides into xylose monomers, and is a rate-limiting enzyme in the degradation of hemicellulose in the cell wall. In this study, ten genes encoding putative BXL proteins were identified in the Populus trichocarpa genome by bioinformatics methods. In the phylogenetic analysis, the PtBXLs formed two subfamilies. PtBXL8 and PtBXL9 were closely related to AtBXL1, an important enzyme in the normal development of the Arabidopsis cell wall structure. Chromosomal distribution and genome synteny analyses revealed two tandem-duplicated gene pairs PtBXL3/4 and PtBXL6/7 on chromosomes II and V, respectively, and six segmental-duplicated gene pairs on chromosomes II, V, VIII, X, and XIV among the PtBXL gene family. Tissue-specific expression data from PlantGenIE indicated that PtBXL2, 4, 5, and 10 were highly expressed in stems. Quantitative real-time RT-PCR analyses revealed that PtBXL4, 5, and 9 were up-regulated in the upper stem in response to the low and high ammonium and nitrate treatments. The influence of nitrogen on the expression of PtBXL4, 5, and 9 genes may affect the formation of the plant secondary cell wall. This comprehensive analysis of the BXL family in poplar provides new insights into their regulation by nitrogen and increases our understanding of the roles of BXLs in hemicellulose metabolism in the secondary cell wall and during plant development.

DOI: 10.1007/s13205-020-2061-5
PubMed: 32015953
PubMed Central: PMC6975742


Affiliations:


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Le document en format XML

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<div type="abstract" xml:lang="en">β-d-xylosidase (BXL) hydrolyzes xylobiose and xylo-oligosaccharides into xylose monomers, and is a rate-limiting enzyme in the degradation of hemicellulose in the cell wall. In this study, ten genes encoding putative BXL proteins were identified in the
<i>Populus trichocarpa</i>
genome by bioinformatics methods. In the phylogenetic analysis, the PtBXLs formed two subfamilies.
<i>PtBXL8</i>
and
<i>PtBXL9</i>
were closely related to
<i>AtBXL1</i>
, an important enzyme in the normal development of the
<i>Arabidopsis</i>
cell wall structure. Chromosomal distribution and genome synteny analyses revealed two tandem-duplicated gene pairs
<i>PtBXL3/4</i>
and
<i>PtBXL6/7</i>
on chromosomes II and V, respectively, and six segmental-duplicated gene pairs on chromosomes II, V, VIII, X, and XIV among the
<i>PtBXL</i>
gene family. Tissue-specific expression data from PlantGenIE indicated that
<i>PtBXL2</i>
,
<i>4</i>
,
<i>5,</i>
and
<i>10</i>
were highly expressed in stems. Quantitative real-time RT-PCR analyses revealed that
<i>PtBXL4</i>
,
<i>5</i>
, and
<i>9</i>
were up-regulated in the upper stem in response to the low and high ammonium and nitrate treatments. The influence of nitrogen on the expression of
<i>PtBXL4</i>
,
<i>5</i>
, and
<i>9</i>
genes may affect the formation of the plant secondary cell wall. This comprehensive analysis of the
<i>BXL</i>
family in poplar provides new insights into their regulation by nitrogen and increases our understanding of the roles of BXLs in hemicellulose metabolism in the secondary cell wall and during plant development.</div>
</front>
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<Year>2020</Year>
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<Day>28</Day>
</DateRevised>
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<ISSN IssnType="Print">2190-572X</ISSN>
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<Issue>2</Issue>
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<Month>Feb</Month>
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<Title>3 Biotech</Title>
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<ArticleTitle>Genome-wide identification of
<i>BXL</i>
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<i>Populus trichocarpa</i>
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<Abstract>
<AbstractText>β-d-xylosidase (BXL) hydrolyzes xylobiose and xylo-oligosaccharides into xylose monomers, and is a rate-limiting enzyme in the degradation of hemicellulose in the cell wall. In this study, ten genes encoding putative BXL proteins were identified in the
<i>Populus trichocarpa</i>
genome by bioinformatics methods. In the phylogenetic analysis, the PtBXLs formed two subfamilies.
<i>PtBXL8</i>
and
<i>PtBXL9</i>
were closely related to
<i>AtBXL1</i>
, an important enzyme in the normal development of the
<i>Arabidopsis</i>
cell wall structure. Chromosomal distribution and genome synteny analyses revealed two tandem-duplicated gene pairs
<i>PtBXL3/4</i>
and
<i>PtBXL6/7</i>
on chromosomes II and V, respectively, and six segmental-duplicated gene pairs on chromosomes II, V, VIII, X, and XIV among the
<i>PtBXL</i>
gene family. Tissue-specific expression data from PlantGenIE indicated that
<i>PtBXL2</i>
,
<i>4</i>
,
<i>5,</i>
and
<i>10</i>
were highly expressed in stems. Quantitative real-time RT-PCR analyses revealed that
<i>PtBXL4</i>
,
<i>5</i>
, and
<i>9</i>
were up-regulated in the upper stem in response to the low and high ammonium and nitrate treatments. The influence of nitrogen on the expression of
<i>PtBXL4</i>
,
<i>5</i>
, and
<i>9</i>
genes may affect the formation of the plant secondary cell wall. This comprehensive analysis of the
<i>BXL</i>
family in poplar provides new insights into their regulation by nitrogen and increases our understanding of the roles of BXLs in hemicellulose metabolism in the secondary cell wall and during plant development.</AbstractText>
<CopyrightInformation>© King Abdulaziz City for Science and Technology 2020.</CopyrightInformation>
</Abstract>
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<Identifier Source="GRID">grid.419897.a</Identifier>
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<AffiliationInfo>
<Affiliation>3State Key Laboratory of Tree Genetics and Breeding (Northeast Forestry University), School of Forestry, Northeast Forestry University, Harbin, 150040 People's Republic of China.</Affiliation>
<Identifier Source="ISNI">0000 0004 1789 9091</Identifier>
<Identifier Source="GRID">grid.412246.7</Identifier>
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</AuthorList>
<Language>eng</Language>
<PublicationTypeList>
<PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic">
<Year>2020</Year>
<Month>01</Month>
<Day>22</Day>
</ArticleDate>
</Article>
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<Country>Germany</Country>
<MedlineTA>3 Biotech</MedlineTA>
<NlmUniqueID>101565857</NlmUniqueID>
<ISSNLinking>2190-5738</ISSNLinking>
</MedlineJournalInfo>
<KeywordList Owner="NOTNLM">
<Keyword MajorTopicYN="N">Evolution</Keyword>
<Keyword MajorTopicYN="N">Expression pattern</Keyword>
<Keyword MajorTopicYN="N">Nitrogen treatment</Keyword>
<Keyword MajorTopicYN="N">Populus trichocarpa</Keyword>
<Keyword MajorTopicYN="N">β-d-xylosidase</Keyword>
</KeywordList>
<CoiStatement>Conflict of interestThe authors declare no competing financial interests.</CoiStatement>
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